Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_1769KEGG: sse:Ssed_2879 hypothetical protein. (222 aa)    
Predicted Functional Partners:
Swoo_1768
KEGG: sse:Ssed_2880 RepA domain protein.
       0.792
Swoo_4906
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: sse:Ssed_4494 ParB family protein; Belongs to the ParB family.
  
 
 0.725
Swoo_0073
PFAM: glycosyl transferase family 2; KEGG: sdn:Sden_0205 glycosyl transferase, family 2.
  
 
 0.648
Swoo_3541
PFAM: type IV pilus assembly PilZ; KEGG: sse:Ssed_3371 type IV pilus assembly PilZ.
  
     0.588
Swoo_1770
PFAM: type IV pilus assembly PilZ; KEGG: sse:Ssed_2878 type IV pilus assembly PilZ.
       0.578
Swoo_3035
KEGG: sse:Ssed_1620 hypothetical protein.
  
     0.552
Swoo_3784
KEGG: sse:Ssed_3885 hypothetical protein.
 
  
 0.550
Swoo_2394
KEGG: sse:Ssed_2227 hypothetical protein.
  
     0.544
Swoo_1804
KEGG: sse:Ssed_2840 hypothetical protein.
  
   
 0.538
Swoo_4218
PFAM: Sel1 domain protein repeat-containing protein; KEGG: sse:Ssed_0751 Sel1 domain protein repeat-containing protein.
 
     0.530
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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