STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1771PFAM: phosphate-starvation-inducible E; KEGG: sse:Ssed_2877 phosphate-starvation-inducible E; Belongs to the PsiE family. (132 aa)    
Predicted Functional Partners:
Swoo_4511
KEGG: sse:Ssed_0458 hypothetical protein.
  
     0.626
Swoo_4334
KEGG: sse:Ssed_0616 hypothetical protein.
  
     0.538
Swoo_1770
PFAM: type IV pilus assembly PilZ; KEGG: sse:Ssed_2878 type IV pilus assembly PilZ.
       0.476
Swoo_1575
KEGG: sse:Ssed_3107 protein of unknown function DUF115.
  
     0.473
Swoo_0232
KEGG: sse:Ssed_0228 outer membrane protein.
  
     0.447
Swoo_1772
PFAM: inositol monophosphatase; KEGG: sse:Ssed_2875 inositol-phosphate phosphatase.
       0.444
Swoo_3124
KEGG: spl:Spea_2697 decaheme cytochrome c.
  
     0.439
Swoo_4184
KEGG: sse:Ssed_0784 hypothetical protein.
  
     0.438
Swoo_4467
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; KEGG: spl:Spea_0489 transcriptional regulator, CadC.
  
     0.431
Swoo_1769
KEGG: sse:Ssed_2879 hypothetical protein.
 
     0.420
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.