STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1787KEGG: spl:Spea_1502 conserved hypothetical protein. (143 aa)    
Predicted Functional Partners:
Swoo_1789
KEGG: sse:Ssed_2856 hypothetical protein.
 
  
 0.884
Swoo_1788
PFAM: protein of unknown function DUF692; KEGG: sse:Ssed_2857 protein of unknown function DUF692; Belongs to the UPF0276 family.
 
  
 0.726
Swoo_2296
KEGG: sse:Ssed_2314 hypothetical protein.
  
     0.705
Swoo_2414
KEGG: sse:Ssed_2222 hypothetical protein.
  
     0.702
Swoo_2888
KEGG: sse:Ssed_1703 hypothetical protein.
  
     0.676
Swoo_3461
KEGG: sse:Ssed_3312 hypothetical protein.
  
     0.674
Swoo_1010
KEGG: sse:Ssed_0960 hypothetical protein.
  
     0.647
Swoo_1812
KEGG: sse:Ssed_2832 hypothetical protein.
  
     0.647
Swoo_3294
PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_3173 GCN5-related N-acetyltransferase.
  
     0.598
Swoo_2856
PFAM: RDD domain containing protein; KEGG: sse:Ssed_1722 RDD domain containing protein.
  
     0.593
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.