STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1789KEGG: sse:Ssed_2856 hypothetical protein. (248 aa)    
Predicted Functional Partners:
Swoo_1788
PFAM: protein of unknown function DUF692; KEGG: sse:Ssed_2857 protein of unknown function DUF692; Belongs to the UPF0276 family.
 
  
 0.976
Swoo_1787
KEGG: spl:Spea_1502 conserved hypothetical protein.
 
  
 0.884
Swoo_1890
PFAM: DoxX family protein; KEGG: sse:Ssed_2748 DoxX family protein.
 
  
 0.873
Swoo_4775
PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: sse:Ssed_4384 hypothetical protein.
 
  
 0.806
Swoo_3034
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sse:Ssed_1621 RNA polymerase, sigma-24 subunit, ECF subfamily.
 
    0.753
Swoo_4062
PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: sfr:Sfri_0904 protein of unknown function DUF692; Belongs to the UPF0276 family.
 
  
 0.752
Swoo_4773
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sse:Ssed_4382 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.551
Swoo_1790
KEGG: sfr:Sfri_2410 hypothetical protein.
       0.491
Swoo_4776
KEGG: sse:Ssed_4385 hypothetical protein.
  
  
 0.490
Swoo_1517
PFAM: DoxX family protein; KEGG: vfi:VFA0336 hypothetical membrane spanning protein.
  
  
 0.463
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.