Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_1791PFAM: protein of unknown function DUF454; KEGG: sse:Ssed_2854 protein of unknown function DUF454. (122 aa)    
Predicted Functional Partners:
Swoo_2418
KEGG: sse:Ssed_2218 hypothetical protein.
   
    0.817
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
       0.579
Swoo_1790
KEGG: sfr:Sfri_2410 hypothetical protein.
  
    0.475
Swoo_0395
KEGG: spl:Spea_0303 conserved hypothetical protein.
 
     0.465
Swoo_1793
DNA polymerase III, subunits gamma and tau; KEGG: sse:Ssed_2852 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.
       0.446
Swoo_1788
PFAM: protein of unknown function DUF692; KEGG: sse:Ssed_2857 protein of unknown function DUF692; Belongs to the UPF0276 family.
  
    0.424
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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