Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1808PFAM: protein of unknown function UPF0227; KEGG: sse:Ssed_2836 protein of unknown function UPF0227; Belongs to the UPF0227 family. (179 aa)    
Predicted Functional Partners:
lapA
Protein of unknown function DUF1049; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.768
Swoo_0048
PFAM: protein of unknown function DUF1488; KEGG: spl:Spea_0041 protein of unknown function DUF1488.
  
     0.765
Swoo_3047
KEGG: sse:Ssed_1602 hypothetical protein.
  
     0.732
Swoo_3014
PFAM: YfcL protein; KEGG: spl:Spea_2585 YfcL protein.
  
     0.719
Swoo_2768
PFAM: protein of unknown function DUF991; KEGG: sse:Ssed_1819 protein of unknown function DUF991.
  
     0.695
Swoo_0443
PFAM: amino acid-binding ACT domain protein; KEGG: sse:Ssed_4164 acetolactate synthase small subunit.
  
     0.671
zapC
Protein of unknown function DUF1379; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ.
  
     0.648
nagZ
Glycoside hydrolase family 3 domain protein; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
  
  
 0.647
Swoo_1223
PFAM: Hpt domain protein; KEGG: sse:Ssed_1128 Hpt protein.
  
     0.640
Swoo_4220
KEGG: spl:Spea_3593 conserved hypothetical protein.
  
     0.620
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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