STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lolDLipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner. (236 aa)    
Predicted Functional Partners:
Swoo_1815
TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_2829 lipoprotein releasing system, transmembrane protein, LolC/E family.
 
 0.983
Swoo_1813
TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_2831 lipoprotein releasing system, transmembrane protein, LolC/E family.
 
 0.979
Swoo_1903
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_2736 ABC transporter permease protein.
 
 0.951
Swoo_4848
PFAM: protein of unknown function DUF214; KEGG: pha:PSHAa2828 ABC transporter permease protein.
 
 0.948
Swoo_3105
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: sse:Ssed_1549 oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
 
    
0.912
lolA
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.851
Swoo_4641
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: scl:sce5713 cell division cycle protein 48-related protein; Belongs to the AAA ATPase family.
  
     0.731
Swoo_1816
PFAM: protein of unknown function DUF218; KEGG: spl:Spea_3336 protein of unknown function DUF218.
       0.687
Swoo_4070
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_3720 protein of unknown function DUF214.
 
 
 0.686
Swoo_1430
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_3196 hypothetical protein.
 
 
 0.679
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.