Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Swoo_1827PFAM: beta-lactamase domain protein; KEGG: sse:Ssed_2823 beta-lactamase domain protein. (291 aa)    
Predicted Functional Partners:
Swoo_1938
PFAM: Carboxymuconolactone decarboxylase; KEGG: pat:Patl_3926 carboxymuconolactone decarboxylase.
 
     0.539
Swoo_0898
KEGG: mmr:Mmar10_1711 coenzyme PQQ synthesis protein B.
 
   
 0.498
Swoo_1828
PFAM: acriflavin resistance protein; KEGG: sse:Ssed_2822 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.497
Swoo_1829
PFAM: acriflavin resistance protein; KEGG: sse:Ssed_2821 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.497
Swoo_1830
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_2820 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.485
Swoo_1555
KEGG: mbn:Mboo_1713 hypothetical protein.
  
     0.453
Swoo_0007
PFAM: Na-Ca exchanger/integrin-beta4; LVIVD repeat protein; KEGG: sdn:Sden_0007 Na-Ca exchanger/integrin-beta4.
  
     0.447
Swoo_2154
PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: sse:Ssed_2450 protein of unknown function DUF882.
  
    0.447
Swoo_4077
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sse:Ssed_3727 NADH dehydrogenase.
  
 0.443
Swoo_1186
PFAM: amidohydrolase; KEGG: hne:HNE_0404 amidohydrolase family protein.
  
     0.425
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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