Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Swoo_1844KEGG: sse:Ssed_2808 hypothetical protein. (163 aa)    
Predicted Functional Partners:
cobB
PFAM: Silent information regulator protein Sir2; KEGG: sse:Ssed_2809 silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
       0.778
Swoo_3457
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sse:Ssed_3308 tetratricopeptide TPR_2 repeat protein.
  
     0.719
Swoo_3084
PFAM: porin Gram-negative type; KEGG: sse:Ssed_2557 porin, gram-negative type.
  
     0.638
Swoo_3023
KEGG: slo:Shew_2422 hypothetical protein.
  
     0.577
Swoo_4350
KEGG: sse:Ssed_0603 hypothetical protein.
  
     0.566
Swoo_0744
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: slo:Shew_0640 TPR repeat-containing protein.
 
     0.554
Swoo_2919
Arachidonate 15-lipoxygenase; PFAM: Lipoxygenase; KEGG: amr:AM1_3903 lipoxygenase.
  
     0.507
Swoo_0654
Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: sse:Ssed_0808 putative signal transduction protein.
  
     0.489
Swoo_3415
PFAM: Lipoxygenase; KEGG: bte:BTH_I2353 arachidonate 15-lipoxygenase precursor (15-LOX).
  
     0.481
Swoo_1402
KEGG: bbr:BB4423 putative esterase.
  
     0.461
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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