Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1845PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: spl:Spea_0257 substrate-binding region of ABC-type glycine betaine transport system. (334 aa)    
Predicted Functional Partners:
Swoo_1846
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sse:Ssed_4236 putative permease.
 
 0.999
Swoo_1847
Glycine betaine/L-proline ABC transporter, ATPase subunit; KEGG: sse:Ssed_4237 putative glycine betaine ABC transporter ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase.
 
 0.998
Swoo_3263
Sodium/hydrogen exchanger; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: sse:Ssed_3143 potassium efflux system protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
     
 0.628
Swoo_1848
KEGG: slo:Shew_3355 hypothetical protein.
       0.540
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
  
 0.506
Swoo_4232
PFAM: protein of unknown function DUF140; KEGG: sse:Ssed_0734 protein of unknown function DUF140.
     
 0.430
purM
KEGG: sse:Ssed_1845 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein.
   
    0.412
Swoo_0998
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sse:Ssed_0947 ABC transporter related; Belongs to the ABC transporter superfamily.
    
 0.409
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
    
 0.409
cobB
PFAM: Silent information regulator protein Sir2; KEGG: sse:Ssed_2809 silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
       0.405
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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