Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1887KEGG: sse:Ssed_2751 hypothetical protein. (86 aa)    
Predicted Functional Partners:
Swoo_1888
TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: sse:Ssed_2750 nicotinamide mononucleotide transporter PnuC.
 
     0.903
Swoo_1886
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_2752 TonB-dependent receptor.
 
     0.880
Swoo_1889
PFAM: Choline/ethanolamine kinase; aminoglycoside phosphotransferase; KEGG: sse:Ssed_2749 aminoglycoside phosphotransferase.
 
     0.750
Swoo_4196
KEGG: sse:Ssed_0773 hypothetical protein.
  
     0.725
Swoo_3454
PFAM: porin Gram-negative type; KEGG: slo:Shew_2750 porin, gram-negative type.
  
     0.562
Swoo_2296
KEGG: sse:Ssed_2314 hypothetical protein.
  
     0.538
Swoo_4152
PFAM: porin Gram-negative type; KEGG: slo:Shew_3260 porin, gram-negative type.
  
     0.524
Swoo_1323
KEGG: sse:Ssed_1223 hypothetical protein.
  
     0.518
Swoo_3090
KEGG: slo:Shew_2488 hypothetical protein.
  
     0.510
Swoo_4151
PFAM: porin Gram-negative type; KEGG: spl:Spea_0589 porin gram-negative type.
  
     0.494
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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