Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1899PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_2740 putative macrolide efflux ABC transporter, ATP-binding protein. (228 aa)    
Predicted Functional Partners:
Swoo_1903
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_2736 ABC transporter permease protein.
 
 0.995
Swoo_4848
PFAM: protein of unknown function DUF214; KEGG: pha:PSHAa2828 ABC transporter permease protein.
 
 0.984
Swoo_3105
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: sse:Ssed_1549 oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
 
    
0.907
Swoo_1902
KEGG: sse:Ssed_2737 membrane-fusion protein.
 
   0.901
Swoo_1901
PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_2738 membrane-fusion protein.
 
    0.861
Swoo_4070
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_3720 protein of unknown function DUF214.
 
 
 0.851
Swoo_1900
KEGG: sse:Ssed_2739 multidrug resistance efflux pump-like protein.
 
    0.823
Swoo_4071
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_3721 protein of unknown function DUF214.
 
 
 0.779
Swoo_1430
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_3196 hypothetical protein.
 
 
 0.737
Swoo_2023
PFAM: protein of unknown function DUF214; KEGG: mmr:Mmar10_0817 protein of unknown function DUF214.
 
 
 0.693
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.