STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1920PFAM: GCN5-related N-acetyltransferase; KEGG: pat:Patl_1517 GCN5-related N-acetyltransferase. (165 aa)    
Predicted Functional Partners:
Swoo_1921
PFAM: OsmC family protein; KEGG: sse:Ssed_2063 hypothetical protein.
       0.651
Swoo_1524
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sse:Ssed_1411 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase.
  
     0.611
Swoo_3247
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: sbn:Sbal195_1860 peptidase S1 and S6 chymotrypsin/Hap.
  
     0.605
Swoo_0198
TIGRFAM: YD repeat protein; PFAM: Fibronectin type III domain protein; YD repeat-containing protein; FG-GAP repeat protein; KEGG: shm:Shewmr7_1180 YD repeat protein.
  
     0.563
Swoo_1045
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sse:Ssed_0992 glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.553
Swoo_1919
PFAM: protein of unknown function DUF938; KEGG: sse:Ssed_2693 protein of unknown function DUF938.
       0.546
Swoo_2639
KEGG: sdn:Sden_0777 hypothetical protein.
  
     0.497
Swoo_1879
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: sse:Ssed_2760 tetratricopeptide TPR_2 repeat protein.
  
     0.458
Swoo_4123
PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: sse:Ssed_3967 carbamoyl-phosphate synthase L chain, ATP-binding.
   
   0.456
Swoo_4577
KEGG: spl:Spea_3873 protein of unknown function DUF159; Belongs to the SOS response-associated peptidase family.
  
     0.431
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.