STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1932KEGG: sse:Ssed_2687 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase. (346 aa)    
Predicted Functional Partners:
Swoo_2336
KEGG: pha:PSHAb0338 homogentisate 1,2-dioxygenase (Homogentisicase) (homogentisate oxygenase) (Homogentisic acid oxidase) [HGD]; TIGRFAM: homogentisate 1,2-dioxygenase; PFAM: homogentisate 12-dioxygenase.
 
 0.998
Swoo_2308
Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: sse:Ssed_2301 aspartate transaminase.
  
 
 0.962
Swoo_2411
Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: sse:Ssed_2225 aspartate transaminase.
  
 
 0.962
Swoo_1715
Phenylalanine-4-hydroxylase; KEGG: sse:Ssed_2930 phenylalanine 4-monooxygenase; TIGRFAM: phenylalanine-4-hydroxylase; PFAM: aromatic amino acid hydroxylase.
 
  
 0.926
hisC
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: sse:Ssed_2543 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
    
 0.917
Swoo_4751
PFAM: aminotransferase class I and II; KEGG: spl:Spea_3654 aminotransferase class I and II.
    
 0.917
Swoo_1719
TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: sse:Ssed_2926 response regulator receiver protein.
 
  
 0.895
Swoo_1718
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sse:Ssed_2927 fumarylacetoacetate (FAA) hydrolase.
 
  
 0.888
Swoo_4123
PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: sse:Ssed_3967 carbamoyl-phosphate synthase L chain, ATP-binding.
  
  
 0.823
Swoo_0212
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: psb:Psyr_0007 aliphatic nitrilase.
   
 0.820
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.