Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Swoo_0809 | Swoo_1937 | KEGG: cps:CPS_2231 hypothetical protein. | KEGG: sse:Ssed_2682 conserved hypothetical ABC transporter protein. | 0.680 |
Swoo_0809 | Swoo_2079 | KEGG: cps:CPS_2231 hypothetical protein. | KEGG: sse:Ssed_2551 extracellular solute-binding protein, family 3. | 0.438 |
Swoo_0809 | Swoo_2990 | KEGG: cps:CPS_2231 hypothetical protein. | SMART: extracellular solute-binding protein family 3; KEGG: sse:Ssed_3523 extracellular solute-binding protein, family 3. | 0.405 |
Swoo_0809 | Swoo_3366 | KEGG: cps:CPS_2231 hypothetical protein. | KEGG: sit:TM1040_3572 spermidine/putrescine-binding periplasmic protein-like. | 0.451 |
Swoo_0809 | Swoo_3508 | KEGG: cps:CPS_2231 hypothetical protein. | KEGG: sse:Ssed_3338 conserved hypothetical amino acid ABC transporter. | 0.503 |
Swoo_1309 | Swoo_1419 | KEGG: saz:Sama_0941 type IV pilus assembly protein PilM. | KEGG: vco:VC0395_0527 hypothetical protein. | 0.729 |
Swoo_1309 | Swoo_1937 | KEGG: saz:Sama_0941 type IV pilus assembly protein PilM. | KEGG: sse:Ssed_2682 conserved hypothetical ABC transporter protein. | 0.703 |
Swoo_1309 | Swoo_2079 | KEGG: saz:Sama_0941 type IV pilus assembly protein PilM. | KEGG: sse:Ssed_2551 extracellular solute-binding protein, family 3. | 0.696 |
Swoo_1309 | Swoo_2375 | KEGG: saz:Sama_0941 type IV pilus assembly protein PilM. | PFAM: ATP-binding region ATPase domain protein; KEGG: dvl:Dvul_2248 multi-sensor signal transduction histidine kinase. | 0.489 |
Swoo_1309 | Swoo_2990 | KEGG: saz:Sama_0941 type IV pilus assembly protein PilM. | SMART: extracellular solute-binding protein family 3; KEGG: sse:Ssed_3523 extracellular solute-binding protein, family 3. | 0.671 |
Swoo_1309 | Swoo_3508 | KEGG: saz:Sama_0941 type IV pilus assembly protein PilM. | KEGG: sse:Ssed_3338 conserved hypothetical amino acid ABC transporter. | 0.699 |
Swoo_1419 | Swoo_1309 | KEGG: vco:VC0395_0527 hypothetical protein. | KEGG: saz:Sama_0941 type IV pilus assembly protein PilM. | 0.729 |
Swoo_1419 | Swoo_1937 | KEGG: vco:VC0395_0527 hypothetical protein. | KEGG: sse:Ssed_2682 conserved hypothetical ABC transporter protein. | 0.688 |
Swoo_1419 | Swoo_2375 | KEGG: vco:VC0395_0527 hypothetical protein. | PFAM: ATP-binding region ATPase domain protein; KEGG: dvl:Dvul_2248 multi-sensor signal transduction histidine kinase. | 0.473 |
Swoo_1419 | Swoo_2990 | KEGG: vco:VC0395_0527 hypothetical protein. | SMART: extracellular solute-binding protein family 3; KEGG: sse:Ssed_3523 extracellular solute-binding protein, family 3. | 0.643 |
Swoo_1419 | Swoo_3152 | KEGG: vco:VC0395_0527 hypothetical protein. | KEGG: slo:Shew_2546 hypothetical protein. | 0.737 |
Swoo_1419 | Swoo_3508 | KEGG: vco:VC0395_0527 hypothetical protein. | KEGG: sse:Ssed_3338 conserved hypothetical amino acid ABC transporter. | 0.592 |
Swoo_1419 | Swoo_4757 | KEGG: vco:VC0395_0527 hypothetical protein. | KEGG: sfr:Sfri_0099 hypothetical protein. | 0.721 |
Swoo_1937 | Swoo_0809 | KEGG: sse:Ssed_2682 conserved hypothetical ABC transporter protein. | KEGG: cps:CPS_2231 hypothetical protein. | 0.680 |
Swoo_1937 | Swoo_1309 | KEGG: sse:Ssed_2682 conserved hypothetical ABC transporter protein. | KEGG: saz:Sama_0941 type IV pilus assembly protein PilM. | 0.703 |
page 1 of 4