Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1946KEGG: sse:Ssed_2676 hypothetical protein. (119 aa)    
Predicted Functional Partners:
Swoo_0801
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sse:Ssed_3781 hypothetical protein.
  
     0.616
Swoo_1080
KEGG: sse:Ssed_1018 hypothetical protein.
  
     0.608
Swoo_1945
KEGG: sse:Ssed_2677 hypothetical protein.
       0.589
Swoo_1205
KEGG: sse:Ssed_1097 hypothetical protein.
  
     0.529
Swoo_2062
KEGG: sse:Ssed_2604 hypothetical protein.
  
     0.519
rlmE
Ribosomal RNA methyltransferase RrmJ/FtsJ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
   
    0.506
Swoo_3597
KEGG: spl:Spea_2434 hypothetical protein.
  
     0.494
Swoo_3837
PFAM: tryptophan halogenase; KEGG: cps:CPS_0239 putative tryptophan halogenase.
  
     0.488
Swoo_1947
TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: sse:Ssed_2675 lytic murein transglycosylase.
       0.478
purC
KEGG: sse:Ssed_2552 phosphoribosylaminoimidazolesuccinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase.
  
     0.473
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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