STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1963PFAM: CheB methylesterase; KEGG: pin:Ping_3721 CheB-type protein glutamate methylesterase. (199 aa)    
Predicted Functional Partners:
Swoo_1962
PFAM: MCP methyltransferase CheR-type; KEGG: pin:Ping_3720 CheR-type protein glutamate methyltransferase.
  
 0.997
Swoo_0166
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: sse:Ssed_0186 CheA signal transduction histidine kinase.
 
 0.996
Swoo_1638
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: sse:Ssed_3046 CheA signal transduction histidine kinase.
 
 0.996
Swoo_0163
MCP methyltransferase, CheR-type; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
  
 0.990
Swoo_1960
KEGG: pin:Ping_3719 sensor histidine kinase with ATPase domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 
 0.982
Swoo_1596
PFAM: MCP methyltransferase CheR-type; KEGG: sse:Ssed_3088 protein-glutamate O-methyltransferase.
  
 0.977
Swoo_4186
TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: sbn:Sbal195_3908 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor.
 
 0.971
Swoo_0165
PFAM: CheW domain protein; KEGG: sse:Ssed_0185 CheW protein.
 
 
 0.967
Swoo_3519
KEGG: spl:Spea_3023 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 0.966
Swoo_1643
PFAM: CheW domain protein; KEGG: sse:Ssed_3041 CheW protein.
 
 
 0.963
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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