STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1965KEGG: lic:LIC20186 hypothetical protein. (134 aa)    
Predicted Functional Partners:
Swoo_1962
PFAM: MCP methyltransferase CheR-type; KEGG: pin:Ping_3720 CheR-type protein glutamate methyltransferase.
       0.480
Swoo_1963
PFAM: CheB methylesterase; KEGG: pin:Ping_3721 CheB-type protein glutamate methylesterase.
       0.480
Swoo_1964
PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: amr:AM1_6357 signal transduction histidine kinase.
       0.480
Swoo_1961
KEGG: pin:Ping_3719 sensor histidine kinase with ATPase domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
       0.455
Swoo_1938
PFAM: Carboxymuconolactone decarboxylase; KEGG: pat:Patl_3926 carboxymuconolactone decarboxylase.
  
     0.446
Swoo_1960
KEGG: pin:Ping_3719 sensor histidine kinase with ATPase domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
       0.437
Swoo_1395
PFAM: protein of unknown function DUF1697; KEGG: cps:CPS_1661 hypothetical protein.
  
     0.402
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.