Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_1970PFAM: alpha/beta hydrolase fold; KEGG: pmy:Pmen_2705 alpha/beta hydrolase fold. (311 aa)    
Predicted Functional Partners:
Swoo_2186
PFAM: alpha/beta hydrolase fold; KEGG: sse:Ssed_2420 alpha/beta hydrolase fold.
  
   
 0.595
Swoo_1969
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sse:Ssed_2664 methyltransferase type 11.
       0.533
Swoo_1971
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: shn:Shewana3_0453 peptidylprolyl isomerase, FKBP-type.
   
   0.449
Swoo_3415
PFAM: Lipoxygenase; KEGG: bte:BTH_I2353 arachidonate 15-lipoxygenase precursor (15-LOX).
  
   
 0.449
Swoo_1392
PFAM: Hydratase/decarboxylase; KEGG: ajs:Ajs_0222 4-oxalocrotonate decarboxylase.
  
  
 0.430
Swoo_1406
PFAM: Hydratase/decarboxylase; KEGG: swi:Swit_0912 4-oxalocrotonate decarboxylase.
  
  
 0.430
Swoo_2318
Hypothetical protein; KEGG: amr:AM1_3564 lipoxygenase.
  
   
 0.427
Swoo_2405
Molydopterin dinucleotide-binding region; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: hau:Haur_2925 molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
     0.422
Swoo_2109
PFAM: alpha/beta hydrolase fold; KEGG: sse:Ssed_2524 alpha/beta hydrolase fold.
  
   
 0.418
Swoo_3624
PFAM: 2OG-Fe(II) oxygenase; KEGG: spc:Sputcn32_0935 2OG-Fe(II) oxygenase.
  
     0.417
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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