Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1973PFAM: Rhodanese domain protein; KEGG: sse:Ssed_2660 rhodanese domain protein; Belongs to the UPF0176 family. (332 aa)    
Predicted Functional Partners:
Swoo_0917
Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
      0.845
Swoo_1972
KEGG: sse:Ssed_2661 glutathione S-transferase, N-terminal domain.
 
     0.711
Swoo_2380
PFAM: pseudouridine synthase; KEGG: sse:Ssed_2250 pseudouridine synthase.
     0.693
Swoo_1751
Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
      0.658
Swoo_0136
PFAM: peptidase S45 penicillin amidase; KEGG: mxa:MXAN_2906 penicillin acylase family protein.
     
 0.588
Swoo_1974
KEGG: sse:Ssed_2656 hypothetical protein.
       0.468
Swoo_3219
PFAM: Glutathione S-transferase domain; KEGG: ppr:PBPRA1656 putative glutathione S-transferase.
 
     0.442
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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