Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_1984PFAM: type IV pilus assembly PilZ; KEGG: sse:Ssed_2646 type IV pilus assembly PilZ. (108 aa)    
Predicted Functional Partners:
Swoo_0335
TIGRFAM: type IV pilus assembly protein PilM; KEGG: sse:Ssed_4270 type IV pilus assembly protein PilM.
  
   
 0.856
Swoo_0338
PFAM: Pilus assembly protein PilP; KEGG: sse:Ssed_4267 methyl-accepting chemotaxis sensory transducer.
  
   
 0.840
Swoo_2555
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: sse:Ssed_2045 diguanylate cyclase/phosphodiesterase.
  
 
   0.831
Swoo_0336
PFAM: Fimbrial assembly family protein; KEGG: sse:Ssed_4269 fimbrial assembly family protein.
  
   
 0.827
Swoo_1983
TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: sse:Ssed_2647 DNA-directed DNA polymerase.
     
 0.826
Swoo_0337
PFAM: Pilus assembly protein PilO; KEGG: sse:Ssed_4268 pilus assembly protein, PilO.
  
   
 0.813
Swoo_0050
KEGG: sse:Ssed_0046 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
    
   0.809
Swoo_0292
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: sse:Ssed_0441 sensory box protein.
    
   0.809
Swoo_0439
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sse:Ssed_4169 diguanylate cyclase.
    
   0.809
Swoo_0471
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: sse:Ssed_4145 diguanylate cyclase/phosphodiesterase.
    
   0.809
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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