STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1987PFAM: nucleoside recognition domain protein; KEGG: sse:Ssed_2643 nucleoside recognition domain protein. (408 aa)    
Predicted Functional Partners:
Swoo_4142
PFAM: peptidase M50; KEGG: sse:Ssed_3980 peptidase M50.
  
  
 0.728
Swoo_3712
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: sse:Ssed_3489 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
  
  
 0.721
rsmF
RNA methylase, NOL1/NOP2/sun family; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.
 
    0.708
Swoo_3520
PFAM: nucleoside recognition domain protein; KEGG: sse:Ssed_3353 nucleoside recognition domain protein.
  
  
 0.707
Swoo_2107
KEGG: sse:Ssed_2526 hypothetical protein.
  
  
 0.601
Swoo_2156
PFAM: SpoVR family protein; KEGG: sse:Ssed_2448 SpoVR family protein.
  
  
 0.494
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
  
 0.493
Swoo_1818
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: sse:Ssed_2827 DNA internalization-related competence protein ComEC/Rec2.
  
   
 0.455
Swoo_1407
Aminocarboxymuconate-semialdehyde decarboxylase; PFAM: amidohydrolase 2; KEGG: aba:Acid345_0682 tryptophan 2,3-dioxygenase.
   
    0.450
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.436
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.