STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1987PFAM: nucleoside recognition domain protein; KEGG: sse:Ssed_2643 nucleoside recognition domain protein. (408 aa)    
Predicted Functional Partners:
Swoo_3712
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: sse:Ssed_3489 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
  
  
 0.824
Swoo_4142
PFAM: peptidase M50; KEGG: sse:Ssed_3980 peptidase M50.
  
  
 0.808
Swoo_3520
PFAM: nucleoside recognition domain protein; KEGG: sse:Ssed_3353 nucleoside recognition domain protein.
  
  
 0.797
rsmF
RNA methylase, NOL1/NOP2/sun family; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.
 
    0.726
Swoo_2156
PFAM: SpoVR family protein; KEGG: sse:Ssed_2448 SpoVR family protein.
  
  
 0.637
rnfC
Electron transport complex, RnfABCDGE type, C subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.
      
 0.577
Swoo_4173
N-acetylmuramoyl-L-alanine amidase; PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: sse:Ssed_0794 N-acetylmuramoyl-L-alanine amidase.
     
 0.575
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
     
 0.562
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
  
 0.535
Swoo_2107
KEGG: sse:Ssed_2526 hypothetical protein.
  
  
 0.520
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.