STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1996KEGG: pmc:P9515_14021 hypothetical protein. (548 aa)    
Predicted Functional Partners:
Swoo_1994
KEGG: pmc:P9515_14041 hypothetical protein.
 
     0.935
Swoo_1992
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pmc:P9515_14061 hypothetical protein.
 
     0.870
Swoo_1995
PFAM: glycosyl transferase family 2; KEGG: pmc:P9515_14031 hypothetical protein.
 
 
 0.860
Swoo_1993
PFAM: phosphoribulokinase/uridine kinase; KEGG: pmc:P9515_14051 hypothetical protein.
 
     0.828
Swoo_1997
PFAM: class II aldolase/adducin family protein; KEGG: bra:BRADO4804 conserved hypothetical protein; putative aldolase/epimerase (AraD-like).
       0.801
Swoo_1682
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.607
Swoo_1086
KEGG: sus:Acid_0589 hypothetical protein.
  
     0.516
Swoo_1681
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.425
Swoo_1998
KEGG: rci:RCIX233 hypothetical protein.
       0.415
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.