STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1998KEGG: rci:RCIX233 hypothetical protein. (359 aa)    
Predicted Functional Partners:
Swoo_1999
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gme:Gmet_1693 radical SAM.
       0.671
Swoo_2000
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pab:PAB1449 hydrolase related.
       0.671
Swoo_2001
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pic:PICST_74165 predicted protein.
       0.671
Swoo_4044
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: sde:Sde_0626 hypothetical protein.
 
     0.653
Swoo_2004
PFAM: ABC-2 type transporter; KEGG: mth:MTH1092 ABC-2 type transport system permease protein.
       0.603
Swoo_2003
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD1268 ABC transporter, ATP-binding protein.
       0.602
Swoo_2002
KEGG: spk:MGAS9429_Spy0880 oxygen-independent coproporphyrinogen-III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB.
       0.594
Swoo_2005
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: afu:AF0115 hypothetical protein.
       0.594
Swoo_4596
KEGG: sfr:Sfri_0352 hypothetical protein.
 
     0.559
Swoo_4606
Tryptophan halogenase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: sse:Ssed_0315 tryptophan halogenase.
 
     0.527
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.