STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2003PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD1268 ABC transporter, ATP-binding protein. (321 aa)    
Predicted Functional Partners:
Swoo_4239
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_0727 ABC transporter-related protein.
    
0.917
Swoo_2004
PFAM: ABC-2 type transporter; KEGG: mth:MTH1092 ABC-2 type transport system permease protein.
 
  
 0.874
Swoo_4363
PFAM: ABC-2 type transporter; KEGG: sse:Ssed_0585 ABC-2 type transporter.
 
  
 0.835
Swoo_2005
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: afu:AF0115 hypothetical protein.
 
     0.810
Swoo_2002
KEGG: spk:MGAS9429_Spy0880 oxygen-independent coproporphyrinogen-III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
    0.777
Swoo_4641
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: scl:sce5713 cell division cycle protein 48-related protein; Belongs to the AAA ATPase family.
  
   0.759
Swoo_1999
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gme:Gmet_1693 radical SAM.
 
     0.724
Swoo_2000
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pab:PAB1449 hydrolase related.
 
     0.722
Swoo_2001
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pic:PICST_74165 predicted protein.
       0.682
Swoo_2505
2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: bcl:ABC0680 molecular chaperone HscC.
  
   0.674
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.