STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2010Coenzyme F390 synthetase-like protein; KEGG: gsu:GSU1729 phenylacetate-CoA ligase. (455 aa)    
Predicted Functional Partners:
Swoo_0223
PFAM: thioesterase superfamily protein; KEGG: dac:Daci_0569 phenylacetic acid degradation protein PaaD.
 
  
 0.756
Swoo_2009
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: drm:Dred_1548 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
       0.737
Swoo_0221
TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: bpt:Bpet1924 putative phenylacetic acid degradation protein.
 
  
 0.618
Swoo_0218
TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: reh:H16_B1360 phenylacetic acid degradation protein D.
 
   
 0.583
Swoo_0219
TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: bbt:BBta_2867 phenylacetic acid degradation protein PaaC.
 
  
 0.570
Swoo_2006
Hypothetical protein.
       0.568
Swoo_2007
PFAM: aminotransferase class V; Pyridoxal-dependent decarboxylase; KEGG: msi:Msm_0987 tyrosine decarboxylase, MfnA.
       0.568
Swoo_2008
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sde:Sde_3662 guanylate kinase/L-type calcium channel region.
       0.568
Swoo_4037
PFAM: AMP-dependent synthetase and ligase; KEGG: pat:Patl_0154 AMP-dependent synthetase and ligase.
 
     0.560
Swoo_0220
TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B; KEGG: bpt:Bpet1925 phenylacetic acid degradation protein.
 
  
 0.525
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.