Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2016Coenzyme F390 synthetase-like protein; KEGG: mmz:MmarC7_1160 phenylacetate--CoA ligase. (452 aa)    
Predicted Functional Partners:
Swoo_0223
PFAM: thioesterase superfamily protein; KEGG: dac:Daci_0569 phenylacetic acid degradation protein PaaD.
 
  
 0.780
Swoo_2017
Hypothetical protein; KEGG: mma:MM_2984 putative ferredoxin.
       0.775
Swoo_2019
PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: fra:Francci3_2770 4-hydroxyphenylacetate 3-hydroxylase.
     
 0.690
Swoo_2018
Hypothetical protein.
       0.675
Swoo_0221
TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: bpt:Bpet1924 putative phenylacetic acid degradation protein.
 
  
 0.650
Swoo_2015
Hypothetical protein.
       0.618
Swoo_0218
TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: reh:H16_B1360 phenylacetic acid degradation protein D.
 
   
 0.616
Swoo_0219
TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: bbt:BBta_2867 phenylacetic acid degradation protein PaaC.
 
  
 0.608
Swoo_2014
Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mhu:Mhun_0253 transcriptional regulator, MarR family.
  
    0.591
Swoo_2012
Pyridoxal-5'-phosphate-dependent protein beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
 
     0.575
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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