STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2022PFAM: protein of unknown function DUF214; KEGG: sde:Sde_1758 putative ABC transport system permease protein. (388 aa)    
Predicted Functional Partners:
Swoo_2023
PFAM: protein of unknown function DUF214; KEGG: mmr:Mmar10_0817 protein of unknown function DUF214.
 
     0.952
Swoo_2021
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mmr:Mmar10_0819 ABC transporter related.
 
 0.950
Swoo_2020
PFAM: secretion protein HlyD family protein; KEGG: sde:Sde_1756 acriflavin resistance protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.907
Swoo_2024
PFAM: DNA alkylation repair enzyme; KEGG: sde:Sde_3708 hypothetical protein.
       0.775
Swoo_4072
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_3722 ABC transporter related.
 
 0.636
Swoo_2025
Hypothetical protein; KEGG: nmu:Nmul_A2516 methyltransferase.
       0.625
Swoo_1899
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_2740 putative macrolide efflux ABC transporter, ATP-binding protein.
 
 
 0.538
Swoo_1431
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRB1124 putative ABC transporter, ATP-binding protein.
 
 
 0.537
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
 
 0.536
Swoo_4106
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_3953 ABC transporter-related protein.
 
 
 0.536
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.