Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2028PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: spl:Spea_2509 protein tyrosine phosphatase. (160 aa)    
Predicted Functional Partners:
Swoo_0566
PFAM: aminotransferase class V; beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: slo:Shew_3354 aminotransferase, class V.
   
 
 0.779
Swoo_0513
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: sse:Ssed_4110 thioredoxin; Belongs to the thioredoxin family.
  
 
 0.728
Swoo_1797
PFAM: Thioredoxin domain; KEGG: sse:Ssed_2848 thioredoxin domain protein.
  
 
 0.728
Swoo_2906
KEGG: sbl:Sbal_2695 hypothetical protein.
  
 
 0.714
Swoo_1651
PFAM: polysaccharide export protein; KEGG: spl:Spea_1395 polysaccharide export protein.
  
  
 0.670
Swoo_4386
TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: sse:Ssed_0575 arsenical-resistance protein.
  
  
 0.656
Swoo_2027
KEGG: mul:MUL_3536 hypothetical protein.
       0.651
Swoo_2026
PFAM: ABC transporter related; KEGG: dsy:DSY1177 hypothetical protein.
     
 0.612
Swoo_1374
PFAM: metallophosphoesterase; KEGG: sse:Ssed_1269 metallophosphoesterase.
     
 0.585
Swoo_4167
HflC protein; HflC and HflK could regulate a protease.
  
    0.585
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.