Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Swoo_2045KEGG: sse:Ssed_2621 hypothetical protein. (122 aa)    
Predicted Functional Partners:
Swoo_4784
KEGG: sse:Ssed_4393 hypothetical protein.
   
    0.821
Swoo_2046
PFAM: thioesterase superfamily protein; KEGG: slo:Shew_1607 thioesterase superfamily protein.
       0.543
Swoo_0661
KEGG: sse:Ssed_3874 hypothetical protein.
   
    0.522
Swoo_3379
PFAM: Propeptide PepSY amd peptidase M4; KEGG: sse:Ssed_3245 propeptide, PepSY amd peptidase M4.
   
    0.522
Swoo_1518
PFAM: CBS domain containing protein; KEGG: spl:Spea_1244 CBS domain containing protein.
   
    0.441
Swoo_2044
3-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
       0.440
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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