Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
speAArginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. (637 aa)    
Predicted Functional Partners:
Swoo_2059
TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: slo:Shew_1621 putative agmatinase; Belongs to the arginase family.
 
 
 0.980
Swoo_0656
KEGG: sse:Ssed_0810 arginine N-succinyltransferase; TIGRFAM: arginine/ornithine succinyltransferase subunit; arginine N-succinyltransferase; PFAM: arginine N-succinyltransferase beta subunit.
  
  
  0.912
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: sse:Ssed_4272 argininosuccinate lyase.
     
 0.828
Swoo_3459
PFAM: conserved hypothetical protein; KEGG: sse:Ssed_3310 hypothetical protein.
  
   
 0.645
Swoo_2058
PFAM: S-adenosylmethionine decarboxylase; KEGG: sse:Ssed_2608 adenosylmethionine decarboxylase.
     
 0.599
Swoo_2009
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: drm:Dred_1548 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
  
 0.587
Swoo_2041
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: sse:Ssed_2625 malonyl CoA-acyl carrier protein transacylase.
   
    0.508
pdxH
Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
 
     0.501
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
     
  0.500
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
 
    0.427
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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