Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2070KEGG: mma:MM_3026 hypothetical protein. (343 aa)    
Predicted Functional Partners:
Swoo_2259
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: cps:CPS_1892 hypothetical protein.
  
     0.567
Swoo_2662
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_1862 TonB-dependent receptor.
 
 
   0.567
Swoo_0978
PFAM: isochorismatase hydrolase; KEGG: sse:Ssed_0932 isochorismatase hydrolase.
  
    0.551
Swoo_0761
KEGG: shm:Shewmr7_0883 putative nitric oxide reductase (subunit B) transmembrane protein.
  
 
 0.513
Swoo_2376
Hypothetical protein; KEGG: lic:LIC10684 putative cytochrome c.
 
 
 0.507
Swoo_2257
KEGG: pat:Patl_1857 cytochrome c550.
 
   0.437
lpxM
Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Catalyzes the transfer of myristate from myristoyl-acyl carrier protein (ACP) to Kdo(2)-(lauroyl)-lipid IV(A) to form Kdo(2)- lipid A.
       0.421
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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