Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2076PFAM: major facilitator superfamily MFS_1; KEGG: sbn:Sbal195_2468 major facilitator superfamily MFS_1. (426 aa)    
Predicted Functional Partners:
Swoo_4255
KEGG: sse:Ssed_0707 putative FG-GAP repeat lipoprotein.
  
     0.632
Swoo_1398
KEGG: cps:CPS_2707 putative lipoprotein.
  
     0.620
Swoo_3259
KEGG: cps:CPS_2688 hypothetical protein.
  
     0.546
Swoo_2937
KEGG: cps:CPS_3046 hypothetical protein.
  
     0.528
Swoo_0042
PFAM: Peptidase M9A collagenase domain protein; KEGG: sse:Ssed_0039 microbial collagenase.
  
     0.463
Swoo_4435
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sse:Ssed_0510 putative lipoprotein.
  
     0.443
Swoo_2993
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_0485 TonB-dependent receptor.
  
     0.441
Swoo_3857
KEGG: sfr:Sfri_3645 putative lipoprotein.
  
     0.427
Swoo_2244
KEGG: pat:Patl_1868 hypothetical protein.
  
     0.426
Swoo_1503
PFAM: regulatory protein MarR; KEGG: saz:Sama_2690 transcriptional regulator, MarR family.
  
     0.425
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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