STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2079KEGG: sse:Ssed_2551 extracellular solute-binding protein, family 3. (262 aa)    
Predicted Functional Partners:
Swoo_1937
KEGG: sse:Ssed_2682 conserved hypothetical ABC transporter protein.
  
     0.757
Swoo_2990
SMART: extracellular solute-binding protein family 3; KEGG: sse:Ssed_3523 extracellular solute-binding protein, family 3.
  
     0.744
Swoo_3152
KEGG: slo:Shew_2546 hypothetical protein.
  
     0.731
Swoo_4757
KEGG: sfr:Sfri_0099 hypothetical protein.
  
     0.708
Swoo_1309
KEGG: saz:Sama_0941 type IV pilus assembly protein PilM.
  
     0.696
Swoo_0092
KEGG: sse:Ssed_0129 hypothetical protein.
  
     0.689
Swoo_2375
PFAM: ATP-binding region ATPase domain protein; KEGG: dvl:Dvul_2248 multi-sensor signal transduction histidine kinase.
 
  
 0.660
Swoo_2427
PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: sse:Ssed_2209 response regulator receiver modulated metal dependent phosphohydrolase.
  
     0.654
Swoo_0954
PFAM: ATP-binding region ATPase domain protein; KEGG: amr:AM1_1966 signal transduction histidine kinase with HAMP domain.
  
     0.643
Swoo_0841
KEGG: hch:HCH_00210 ABC-type sugar transport system, periplasmic component.
  
     0.621
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.