Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2095PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pat:Patl_3733 cold-shock DNA-binding domain protein. (68 aa)    
Predicted Functional Partners:
Swoo_2094
PFAM: protein of unknown function DUF6 transmembrane; KEGG: sbl:Sbal_3174 protein of unknown function DUF6, transmembrane.
       0.551
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 
 0.519
rpmC
PFAM: ribosomal protein L29; KEGG: sse:Ssed_4309 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
   
   0.503
rplW
Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
   
   0.500
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
   0.499
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
 
 0.497
Swoo_2096
PFAM: glutathione synthase; glutathione synthase ATP-binding; KEGG: vfi:VF0976 glutathione synthetase.
       0.469
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
   0.461
rpmJ
PFAM: ribosomal protein L36; KEGG: saz:Sama_0234 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.460
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
   
 
 0.446
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.