STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2095PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pat:Patl_3733 cold-shock DNA-binding domain protein. (68 aa)    
Predicted Functional Partners:
Swoo_2094
PFAM: protein of unknown function DUF6 transmembrane; KEGG: sbl:Sbal_3174 protein of unknown function DUF6, transmembrane.
       0.551
Swoo_2096
PFAM: glutathione synthase; glutathione synthase ATP-binding; KEGG: vfi:VF0976 glutathione synthetase.
       0.469
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 
 0.453
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
   
 
 0.431
rpmJ
PFAM: ribosomal protein L36; KEGG: saz:Sama_0234 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.425
Swoo_4708
PFAM: RNP-1 like RNA-binding protein; KEGG: sse:Ssed_4336 RNP-1-like RNA-binding protein.
   
 0.418
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 
 0.412
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
   0.403
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
   
 
 0.403
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.