STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2102PFAM: Aldehyde Dehydrogenase; KEGG: sse:Ssed_2531 NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (471 aa)    
Predicted Functional Partners:
Swoo_2101
PFAM: glutamine synthetase catalytic region; KEGG: sse:Ssed_2532 hypothetical protein.
 
  
 0.863
Swoo_2103
PFAM: iron-containing alcohol dehydrogenase; KEGG: sse:Ssed_2530 alcohol dehydrogenase.
 
 0.836
Swoo_2104
PFAM: glutamine amidotransferase class-I; KEGG: sse:Ssed_2529 GMP synthase - glutamine amidotransferase domain.
 
   
 0.615
Swoo_2724
Integral membrane sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sse:Ssed_1864 integral membrane sensor hybrid histidine kinase.
  
 
 0.504
Swoo_1221
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: sse:Ssed_1126 glutamate synthase (ferredoxin).
  
  
 0.419
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.