STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2108KEGG: spl:Spea_2450 conserved hypothetical protein. (276 aa)    
Predicted Functional Partners:
Swoo_3082
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sdn:Sden_2427 TonB-dependent receptor, plug.
  
     0.725
Swoo_1784
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_2861 TonB-dependent receptor.
  
     0.694
Swoo_2109
PFAM: alpha/beta hydrolase fold; KEGG: sse:Ssed_2524 alpha/beta hydrolase fold.
       0.689
Swoo_3083
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_1252 TonB-dependent receptor.
  
     0.679
Swoo_3658
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_2359 TonB-dependent receptor.
  
     0.659
Swoo_2565
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_2036 TonB-dependent receptor.
  
     0.637
Swoo_2875
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_1716 TonB-dependent receptor, plug.
  
     0.633
Swoo_2924
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sde:Sde_3035 TonB-dependent receptor.
  
     0.616
Swoo_2263
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_0679 conserved hypothetical TonB-dependent receptor.
  
     0.607
Swoo_0245
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
     0.599
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.