STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2118PFAM: beta-lactamase; KEGG: sse:Ssed_2498 beta-lactamase. (389 aa)    
Predicted Functional Partners:
Swoo_0904
PFAM: beta-lactamase; KEGG: spc:Sputcn32_0856 beta-lactamase.
  
   
 0.753
Swoo_3644
PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_3442 major facilitator superfamily MFS_1.
      
 0.631
Swoo_0316
PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: slo:Shew_3434 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD.
      
 0.626
Swoo_4375
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_1397 TonB-dependent receptor.
  
     0.551
nagZ
Glycoside hydrolase family 3 domain protein; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
  
  
 0.495
Swoo_3838
PFAM: SapC family protein; KEGG: cps:CPS_0240 hypothetical protein.
  
     0.492
Swoo_1307
PFAM: SapC family protein; KEGG: sse:Ssed_1210 SapC family protein.
  
     0.451
Swoo_4376
PFAM: glycoside hydrolase family 16; KEGG: saz:Sama_1396 glucan endo-1,3-beta-D-glucosidase.
  
     0.442
Swoo_1989
Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
      
 0.435
Swoo_2119
PFAM: peptidase S51 dipeptidase E; KEGG: sse:Ssed_2497 peptidase S51, dipeptidase E; Belongs to the peptidase S51 family.
       0.429
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.