Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2123PFAM: OmpA/MotB domain protein; KEGG: sse:Ssed_2493 OmpA/MotB domain protein. (238 aa)    
Predicted Functional Partners:
Swoo_2124
LPXTG-motif cell wall anchor domain protein; KEGG: sse:Ssed_2492 vault protein inter-alpha-trypsin domain protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: von Willebrand factor type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa.
 
    0.950
Swoo_2125
TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: sse:Ssed_2491 sortase family protein.
 
    0.821
Swoo_1344
PFAM: OmpA/MotB domain protein; KEGG: sse:Ssed_1244 OmpA/MotB domain protein.
  
     0.728
Swoo_1281
PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: slo:Shew_1090 OmpA/MotB domain protein; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
   0.701
Swoo_2738
PFAM: OmpA/MotB domain protein; KEGG: sse:Ssed_1851 OmpA/MotB domain protein.
  
     0.685
Swoo_0473
PFAM: OmpA/MotB domain protein; KEGG: sse:Ssed_4143 OmpA/MotB domain protein.
  
     0.672
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
     0.654
Swoo_2121
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sse:Ssed_2495 integral membrane sensor signal transduction histidine kinase.
 
     0.620
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.607
Swoo_0736
PFAM: OmpA/MotB domain protein; KEGG: slo:Shew_0632 OmpA/MotB domain protein.
  
     0.590
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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