STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2127PFAM: Mammalian cell entry related domain protein; KEGG: sse:Ssed_2489 mammalian cell entry related domain protein. (874 aa)    
Predicted Functional Partners:
Swoo_2128
PFAM: Paraquat-inducible protein A; KEGG: sse:Ssed_2488 paraquat-inducible protein A.
 
  
 0.952
Swoo_2129
PFAM: Paraquat-inducible protein A; KEGG: sse:Ssed_2487 paraquat-inducible protein A.
 
  
 0.951
Swoo_2073
TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: cps:CPS_3076 integral membrane protein, PqiA family.
 
  
 0.791
Swoo_2131
KEGG: sfr:Sfri_2230 putative GAF sensor protein.
   
   0.496
Swoo_2130
PFAM: YebG family protein; KEGG: sse:Ssed_2486 YebG family protein.
       0.470
Swoo_2126
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sse:Ssed_2490 diguanylate cyclase.
       0.447
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.