STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2129PFAM: Paraquat-inducible protein A; KEGG: sse:Ssed_2487 paraquat-inducible protein A. (208 aa)    
Predicted Functional Partners:
Swoo_2127
PFAM: Mammalian cell entry related domain protein; KEGG: sse:Ssed_2489 mammalian cell entry related domain protein.
 
  
 0.951
Swoo_2128
PFAM: Paraquat-inducible protein A; KEGG: sse:Ssed_2488 paraquat-inducible protein A.
    
0.896
Swoo_2074
PFAM: Mammalian cell entry related domain protein; KEGG: cps:CPS_3077 putative paraquat-inducible protein B.
 
  
 0.794
Swoo_2130
PFAM: YebG family protein; KEGG: sse:Ssed_2486 YebG family protein.
       0.473
Swoo_2131
KEGG: sfr:Sfri_2230 putative GAF sensor protein.
       0.460
Swoo_2126
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sse:Ssed_2490 diguanylate cyclase.
       0.447
lipB
Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
   
    0.440
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.