Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Swoo_2133Carboxyl-terminal protease; KEGG: sse:Ssed_2483 C-terminal processing peptidase; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; Belongs to the peptidase S41A family. (690 aa)    
Predicted Functional Partners:
proQ
ProQ activator of osmoprotectant transporter ProP; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.
 
  
 0.825
Swoo_3555
TPR repeat-containing protein; May be involved in cell division.
  
 
 
 0.791
Swoo_4872
PFAM: NLP/P60 protein; KEGG: sse:Ssed_4465 NLP/P60 protein.
    
 
 0.722
Swoo_2134
TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: sse:Ssed_2482 aminopeptidase N.
     
 0.597
Swoo_2131
KEGG: sfr:Sfri_2230 putative GAF sensor protein.
     
 0.595
Swoo_2135
KEGG: sse:Ssed_2481 hypothetical protein.
       0.565
Swoo_4878
PFAM: peptidase M23B; KEGG: sse:Ssed_4471 peptidase M23B.
  
  
 0.537
nfuA
IscR-regulated protein YhgI; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
 
     0.535
Swoo_3274
TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: sse:Ssed_3154 putative membrane-associated zinc metalloprotease.
 
  
 0.426
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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