STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2137PFAM: protein of unknown function DUF1329; KEGG: sse:Ssed_2479 protein of unknown function DUF1329. (454 aa)    
Predicted Functional Partners:
Swoo_2136
PFAM: protein of unknown function DUF1302; KEGG: sse:Ssed_2480 protein of unknown function DUF1302.
 
    0.975
Swoo_2138
KEGG: sse:Ssed_2478 BNR repeat protein.
 
  
 0.951
Swoo_2320
PFAM: protein of unknown function DUF1302; KEGG: cps:CPS_3432 hypothetical protein.
 
    0.918
Swoo_2139
KEGG: sse:Ssed_2477 hypothetical protein.
 
  
 0.913
Swoo_1165
KEGG: sse:Ssed_1083 major outer membrane lipoprotein, putative.
    
 
 0.664
lolB
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
    
 
 0.648
Swoo_2904
KEGG: sse:Ssed_1693 hypothetical protein.
 
    0.499
Swoo_3074
SMART: Tetratricopeptide domain protein; KEGG: sse:Ssed_1576 tetratricopeptide domain protein.
  
     0.458
Swoo_4173
N-acetylmuramoyl-L-alanine amidase; PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: sse:Ssed_0794 N-acetylmuramoyl-L-alanine amidase.
    
   0.442
Swoo_2296
KEGG: sse:Ssed_2314 hypothetical protein.
  
     0.430
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.