Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2138KEGG: sse:Ssed_2478 BNR repeat protein. (342 aa)    
Predicted Functional Partners:
Swoo_2139
KEGG: sse:Ssed_2477 hypothetical protein.
 
  
 0.983
Swoo_2137
PFAM: protein of unknown function DUF1329; KEGG: sse:Ssed_2479 protein of unknown function DUF1329.
 
  
 0.951
Swoo_2136
PFAM: protein of unknown function DUF1302; KEGG: sse:Ssed_2480 protein of unknown function DUF1302.
 
    0.939
Swoo_2319
PFAM: protein of unknown function DUF1329; KEGG: cps:CPS_3433 hypothetical protein.
 
  
 0.885
Swoo_2320
PFAM: protein of unknown function DUF1302; KEGG: cps:CPS_3432 hypothetical protein.
 
    0.866
Swoo_3183
KEGG: spl:Spea_3168 exporter of the RND superfamily protein-like protein.
 
  
 0.546
Swoo_2904
KEGG: sse:Ssed_1693 hypothetical protein.
 
    0.531
Swoo_2140
PFAM: NAD-glutamate dehydrogenase; KEGG: sse:Ssed_2476 NAD-glutamate dehydrogenase.
       0.498
pyrD
Dihydroorotate oxidase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
     
 0.472
Swoo_2146
KEGG: sse:Ssed_2470 hypothetical protein.
 
     0.463
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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