STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2154PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: sse:Ssed_2450 protein of unknown function DUF882. (171 aa)    
Predicted Functional Partners:
Swoo_2153
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: sse:Ssed_2451 peptidoglycan-binding domain 1 protein.
 
     0.875
Swoo_0560
Peptidase U6 penicillin-insensitive murein endopeptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus.
  
     0.720
Swoo_2954
PFAM: beta-lactamase domain protein; KEGG: spl:Spea_1635 beta-lactamase domain protein.
  
    0.635
Swoo_0566
PFAM: aminotransferase class V; beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: slo:Shew_3354 aminotransferase, class V.
  
    0.430
Swoo_1117
PFAM: beta-lactamase domain protein; KEGG: ecv:APECO1_3784 hypothetical protein.
  
    0.421
Swoo_1827
PFAM: beta-lactamase domain protein; KEGG: sse:Ssed_2823 beta-lactamase domain protein.
  
    0.421
gloB
Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
  
    0.421
Swoo_2853
PFAM: beta-lactamase domain protein; KEGG: cps:CPS_1904 metallo-beta-lactamase family protein.
  
    0.421
Swoo_3595
PFAM: beta-lactamase domain protein; KEGG: sse:Ssed_3414 beta-lactamase.
  
    0.421
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.