Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2156PFAM: SpoVR family protein; KEGG: sse:Ssed_2448 SpoVR family protein. (508 aa)    
Predicted Functional Partners:
Swoo_2157
PFAM: protein of unknown function DUF444; KEGG: sse:Ssed_2447 protein of unknown function DUF444; Belongs to the UPF0229 family.
 
  
 0.997
Swoo_2158
PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: sse:Ssed_2446 putative serine protein kinase, PrkA.
 
  
 0.995
Swoo_1987
PFAM: nucleoside recognition domain protein; KEGG: sse:Ssed_2643 nucleoside recognition domain protein.
  
  
 0.637
Swoo_3120
PFAM: protein of unknown function DUF1282; KEGG: sse:Ssed_1534 protein of unknown function DUF1282.
   
    0.606
Swoo_2710
PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: sse:Ssed_1877 Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
    0.599
Swoo_4356
KEGG: pca:Pcar_2459 hypothetical protein.
   
    0.498
Swoo_4323
PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: sse:Ssed_0626 PhoH family protein.
   
    0.462
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.