Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2158PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: sse:Ssed_2446 putative serine protein kinase, PrkA. (644 aa)    
Predicted Functional Partners:
Swoo_2157
PFAM: protein of unknown function DUF444; KEGG: sse:Ssed_2447 protein of unknown function DUF444; Belongs to the UPF0229 family.
 
  
 0.997
Swoo_2156
PFAM: SpoVR family protein; KEGG: sse:Ssed_2448 SpoVR family protein.
 
  
 0.995
Swoo_2710
PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: sse:Ssed_1877 Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
    0.546
Swoo_3394
PFAM: Catalase domain protein; KEGG: sse:Ssed_3251 catalase; Belongs to the catalase family.
   
  
 0.546
Swoo_3881
PFAM: Catalase domain protein; KEGG: neu:NE1886 catalase; Belongs to the catalase family.
   
  
 0.546
rpoS
RNA polymerase, sigma 70 subunit, RpoD family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.
  
  
 0.524
Swoo_2159
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
    0.515
rmf
Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family.
   
    0.504
Swoo_4323
PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: sse:Ssed_0626 PhoH family protein.
   
  
 0.503
Swoo_2399
PFAM: ThiJ/PfpI domain protein; KEGG: esa:ESA_02574 hypothetical protein.
   
    0.484
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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