STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2158PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: sse:Ssed_2446 putative serine protein kinase, PrkA. (644 aa)    
Predicted Functional Partners:
Swoo_2156
PFAM: SpoVR family protein; KEGG: sse:Ssed_2448 SpoVR family protein.
 
  
 0.993
Swoo_2157
PFAM: protein of unknown function DUF444; KEGG: sse:Ssed_2447 protein of unknown function DUF444; Belongs to the UPF0229 family.
 
  
 0.992
Swoo_4323
PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: sse:Ssed_0626 PhoH family protein.
   
  
 0.520
rpoS
RNA polymerase, sigma 70 subunit, RpoD family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.
  
  
 0.495
Swoo_2710
PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: sse:Ssed_1877 Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
    0.479
Swoo_3394
PFAM: Catalase domain protein; KEGG: sse:Ssed_3251 catalase; Belongs to the catalase family.
   
  
 0.464
Swoo_3881
PFAM: Catalase domain protein; KEGG: neu:NE1886 catalase; Belongs to the catalase family.
   
  
 0.464
Swoo_2159
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
    0.459
Swoo_4923
Catalase domain protein; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
   
  
 0.450
rmf
Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family.
   
    0.449
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.