Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2163KEGG: sse:Ssed_2442 hypothetical protein. (369 aa)    
Predicted Functional Partners:
Swoo_1328
KEGG: sse:Ssed_1228 hypothetical protein.
  
     0.725
Swoo_2164
TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA; KEGG: sse:Ssed_2441 chromosomal replication initiator, DnaA; Belongs to the DnaA family.
 
     0.720
Swoo_2601
KEGG: sse:Ssed_2002 hypothetical protein.
 
    0.719
Swoo_2144
PFAM: glutaredoxin 2; KEGG: spl:Spea_1947 glutaredoxin 2.
  
     0.656
Swoo_1202
KEGG: sse:Ssed_1094 hypothetical protein.
  
     0.649
Swoo_1642
PFAM: CheW domain protein; KEGG: sse:Ssed_3042 CheW protein.
  
     0.635
Swoo_0352
PFAM: LppC family lipoprotein; KEGG: sse:Ssed_4251 LppC family lipoprotein.
  
     0.622
Swoo_2162
TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: sse:Ssed_2443 uracil-xanthine permease.
       0.614
Swoo_4725
General secretion pathway M protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.573
Swoo_4730
TIGRFAM: general secretion pathway protein H; KEGG: sse:Ssed_4354 general secretion pathway protein H.
  
     0.571
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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