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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2168TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: sse:Ssed_2438 arsenate reductase. (116 aa)    
Predicted Functional Partners:
Swoo_2167
KEGG: sse:Ssed_2439 hypothetical protein.
       0.781
Swoo_2842
PFAM: DSBA oxidoreductase; KEGG: sse:Ssed_1742 DsbA oxidoreductase.
   
 
 0.766
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.724
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.697
Swoo_4387
PFAM: regulatory protein ArsR; KEGG: sse:Ssed_0574 transcriptional regulator, ArsR family.
     
 0.677
Swoo_2169
Peptidase M48 Ste24p; Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state.
  
  
 0.587
Swoo_1443
PFAM: PhnA protein; KEGG: sse:Ssed_1349 putative PhnA protein.
 
   
 0.543
Swoo_3608
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
  
   
 0.493
Swoo_1498
PFAM: permease; KEGG: vfi:VFA0175 hypothetical membrane spanning protein.
     
 0.441
Swoo_0716
PFAM: phosphate transporter; KEGG: sse:Ssed_3844 phosphate transporter.
      
 0.420
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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