Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Swoo_2168TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: sse:Ssed_2438 arsenate reductase. (116 aa)    
Predicted Functional Partners:
Swoo_2167
KEGG: sse:Ssed_2439 hypothetical protein.
     
 0.822
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.671
Swoo_4387
PFAM: regulatory protein ArsR; KEGG: sse:Ssed_0574 transcriptional regulator, ArsR family.
     
 0.670
Swoo_2169
Peptidase M48 Ste24p; Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state.
  
  
 0.646
Swoo_1443
PFAM: PhnA protein; KEGG: sse:Ssed_1349 putative PhnA protein.
 
   
 0.533
Swoo_2842
PFAM: DSBA oxidoreductase; KEGG: sse:Ssed_1742 DsbA oxidoreductase.
    
 
 0.531
Swoo_4386
TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: sse:Ssed_0575 arsenical-resistance protein.
     
 0.515
Swoo_2171
PFAM: protein of unknown function UPF0118; KEGG: sse:Ssed_2435 protein of unknown function UPF0118.
     
 0.402
Swoo_2189
PFAM: arsenate reductase and related; KEGG: sse:Ssed_2417 hypothetical protein; Belongs to the ArsC family.
   
  
 0.402
Swoo_1499
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: ppr:PBPRA2744 hypothetical transcriptional regulator, ArsR family.
     
 0.401
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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