STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2169Peptidase M48 Ste24p; Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state. (486 aa)    
Predicted Functional Partners:
Swoo_2168
TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: sse:Ssed_2438 arsenate reductase.
  
  
 0.587
Swoo_0567
PFAM: peptidase M48 Ste24p; KEGG: vvy:VV2911 Zn-dependent protease with chaperone function.
  
     0.565
Swoo_2167
KEGG: sse:Ssed_2439 hypothetical protein.
 
     0.525
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
  
 0.500
Swoo_2170
PFAM: SirA family protein; KEGG: sse:Ssed_2436 SirA family protein; Belongs to the sulfur carrier protein TusA family.
       0.478
Swoo_1264
TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: sse:Ssed_1169 ribosomal subunit interface protein.
  
     0.477
Swoo_4878
PFAM: peptidase M23B; KEGG: sse:Ssed_4471 peptidase M23B.
 
 
   0.449
Swoo_2171
PFAM: protein of unknown function UPF0118; KEGG: sse:Ssed_2435 protein of unknown function UPF0118.
       0.446
Swoo_0400
PFAM: DSBA oxidoreductase; KEGG: sse:Ssed_4193 DsbA oxidoreductase.
 
     0.415
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.404
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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